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= '''[[Eduzendium]] - a Citizendium initiative''' =
{{subpages}}
{{Taxobox
| color = pink
| name = ''Streptococcus pneumoniae''
| image = Streptococcus pneumoniae.jpg|thumb|{{#ifexist:Template:Streptococcus pneumoniae.jpg/credit|{{Streptococcus pneumoniae.jpg/credit}}<br/>|}}Electron microscope photomicrograph of Streptococcus pneumoniae
| regnum = [[Bacteria]]
| phylum = [[Firmicutes]]
| classis = [[Diplococci]]
| ordo =  [[Lactobacillales]]
| familia = [[Streptococcaceae]]
| genus =  [[Streptococcus]]
| species = [[Streptococcus]]
| binomial = ''Streptococcus pneumoniae''
| binomial_authority =
}}
[[Image:.]]
==Description and significance==
Streptococcus pneumoniae, also called pneumococcus, is a [[Gram-positive]], [[pathogenic]] bacterium capable of causing numerous infections. It the most common cause of [[pneumonia]] and [[bacterial meningitis]], and is commonly found in the upper [[respiratory tract]] of humans. ''S. pneumoniae'' is shaped like a lancet, a type of knife with a short wide two-edged blade. It is alpha [[hemolytic]] (a classification method using the breakdown of [[red blood cells]]) and is usually between 0.5 and 1.25 micrometers in size.<ref>[http://www.medterms.com/script/main/art.asp?articlekey=11270 Medicinenet: Streptococcus pneumoniae]</ref><ref>[http://www.textbookofbacteriology.net/S.pneumoniae.html Textbook of Bacteriology: Streptococcus pneumoniae]</ref>


This article is currently being developed as part of the Eduzendium initiative. It is a student project involving the General Microbiology course at Queens College in New York City. As such, it is closed to outside editing for the duration of the course.
''S. pneumoniae'' was first isolated in 1881 simultaneously by U.S. Army physician [[George Sternberg]] and French chemist [[Louis Pasteur]]. ''S. pneumoniae'' has been used to prove that genetic material consists of [[DNA]]. In 1928 [[Frederick Griffith]] co-inoculated live pneumococci into a mouse along with heat-killed, virulent pneumococci. The live, harmless pneumococci were transformed into the lethal form. In 1944 [[Oswald Avery]], [[Colin MacLeod]] and [[Maclyn McCarty]] found that the transforming factor in Griffith's experiment was DNA. <ref>{{citation
| title = The Great Influenza: The Epic Story of the Deadliest Plague In History
| author = John M. Barry | publisher = Viking | year =2004}}</ref>


The anticipated date of course completion is 1st May 2008. At the end of the project period, this notice will be removed and the article reopened to general editing.
==Genome structure==


Thank you.  
''S. pneumoniae'' has a 2,160,837 base pair [[genome sequence]]. Its [[chromosome]] is circular and has 2236 [[coding regions]]. Approximately 5% of the genome is composed of [[insertion sequences]] that may contribute to [[genome rearrangements]] through uptake of foreign DNA. ''S. pneumoniae'' has shown a significant increase in [[antibiotic resistance]] over the past few decades, due to its rapid growth rate and genetic rearrangements.<ref>[http://cmr.tigr.org/tigr-scripts/CMR/GenomePage.cgi?org=bsp Streptococcus pneumoniae TIGR4 Genome Page]</ref><ref>[http://www.textbookofbacteriology.net/S.pneumoniae.html Textbook of Bacteriology: Streptococcus pneumoniae]</ref>


==Classification==
==Cell structure and metabolism==


[[Image: Tosco_Refinery.jpg]]
''S. pneumoniae'' is completely surrounded by a [[capsule]] made up of [[polysaccharides]]. The capsule interferes with [[phagocytosis]] by preventing [[opsonins|opsonization]] of its cells. The cell wall of ''S. pneumoniae'' is six layers thick and made up of [[peptidoglycan]] with [[teichoic]] and lipoteichoic acids. Within these acids are [[choline-binding proteins]] (CBPs), which adhere to choline receptors on human cells. ''S. pneumoniae'' has [[pili]], which are hair-like structures extending from its surface. It also has more than 500 surface proteins, including five [[penicillin binding proteins]] (PBPs), two [[neuraminidases]], an IgA [[protease]], as well as choline-binding proteins as stated previously.<ref>[http://www.textbookofbacteriology.net/S.pneumoniae.html Textbook of Bacteriology: Streptococcus pneumoniae]</ref>


===Higher order taxa===
''S. pneumoniae'' gains a substantial amount of carbon and nitrogen using [[extracellular enzyme systems]] which allow for the metabolism of polysaccharides and [[hexosamines]]. These systems also damage host tissues and facilitate colonization.<ref>[http://www.textbookofbacteriology.net/S.pneumoniae.html Textbook of Bacteriology: Streptococcus pneumoniae]</ref>


Domain; Phylum; Class; Order; family [Others may be used.  Use [http://www.tolweb.org/tree/ Tree of Life] link to find]
==Ecology==


===Species===
''S. pneumoniae'' is commonly found in the [[upper respiratory tract]] of humans, specifically the [[nasopharynx]] region. It is found in 5-10% of healthy adults, and 20-40% of healthy children, and  is non-pathogenic unless it travels outside this area, with area-specific presentations of infection.


''Genus species''[[Image:Example.jpg]]
''S. pneumoniae'' sometimes shares its normal habitat with the pathogen [[Haemophilus influenzae]]. Individually each pathogen thrives on its own. However, when both pathogens inhabit the region at the same time, after 2 weeks only ''H. influenzae'' survives. Immune response caused by ''H. influenzae'' leads to the death of S. pneumoniae.


==Description and significance==
==Pathology==
Describe the appearance, habitat, etc. of the organism, and why it is important enough to have its genome sequenced.  Describe how and where it was isolated.
Include a picture or two (with sources) if you can find them.
 
==Genome structure==
Describe the size and content of the genome.  How many chromosomes?  Circular or linear?  Other interesting features?  What is known about its sequence?
Does it have any plasmids?  Are they important to the organism's lifestyle?


==Cell structure and metabolism==
Depending on where ''S. pneumoniae'' travels, different infections will occur. If it reaches the [[Eustachian tube]] or [[nasal sinuses]], [[otitis media]] and [[sinusitis]] will result. If it enters the lungs, [[pneumonia]] will occur. If ''S. pneumoniae'' enters the bloodstream, [[bacteremia]] will occur and can subsequently result in [[meningitis]], [[brain abscess]], [[septic arthritis]], or [[osteomyelitis]]. ''S. pneumoniae'' most commonly causes pneumonia and meningitis. Symptoms of pneumonia are cough producing green or yellow sputum, chills, chest pain, fever, and difficulty breathing. Symptoms of meningitis are severe headache, neck stiffness, and fever.<ref>
Describe any interesting features and/or cell structures; how it gains energy; what important molecules it produces.
[http://www.who.int/vaccine_research/diseases/ari/en/index5.html World Health Organization: Streptococcus pneumoniae]</ref>


==Ecology==
''S. pneumoniae'' has several [[virulence factors]] which enable it to evade the human immune system. It has a polysaccharide capsule, which interferes with phagocytosis by preventing opsonization of its cells. It has [[pneumolysin]], a protein that causes [[lysis]] of host cells and prevents activation of the [[complement pathway]]. It also has [[autolysin]], which lyses its own cells to release its contents. Other virulence factors include [[hydrogen peroxide]], pili, and choline binding protein.<ref>[http://www.textbookofbacteriology.net/S.pneumoniae.html Textbook of Bacteriology: Streptococcus pneumoniae]</ref>
Describe any interactions with other organisms (included eukaryotes), contributions to the environment, effect on environment, etc.


==Pathology==
==Vaccination==
How does this organism cause disease? Human, animal, plant hosts? Virulence factors, as well as patient symptoms.
{{main|Pneumococcal vaccine}}
The reason it is difficult to pinpoint a vaccination is due to the fact  that over 90 [[serotypes]]  of ''S.  pneumoniae'' exist, and that  immunization with a one serotype does not protect against infection with  other serotypes. Vaccinations currently in use target multiple serotypes. Young children (under 60 months) are given a [[heptavalent  pneumococcal conjugate vaccine]] (PCV 7) such as [[Prevnar]].


==Application to Biotechnology==
A recent study showed that a pneumococcal conjugate vaccine introduced  in children in the year 2000 showed a significant decrease in effect  after 4 years. The 7-Valent pneumococcal conjugate vaccine (PCV7) was  introduced in children in 2000, and the proportion of ''S. pneumoniae'' isolates susceptible to the  antibiotic was tested yearly. After 4 years, the proportion of  susceptible isolates decreased significantly, showing that ''S. pneumoniae'' builds resistance to antibiotics  fairly rapidly.<ref>[http://www.pidj.org/pt/re/pidj/abstract.00006454-200702000-00005.htm;jsessionid=Hy6b2gW3FchRfm2P1KSXJGdl4FLDs895xbvPXPMn39yppzs2JQPh!1569501743!181195629!8091!-1  Farrell, D., Klugman, K., Pichichero, M. "Increased Antimicrobial  Resistance Among Nonvaccine Serotypes of Streptococcus pneumoniae in the  Pediatric Population After the Introduction of 7-Valent Pneumococcal Vaccine in the United States". ''Pediatric Infectious Disease Journal''. February 2007. Vol. 26. p. 123-128.]</ref>
Does this organism produce any useful compounds or enzymes? What are they and how are they used?


==Current Research==
''S. pneumoniae'' vaccines are typically injected into  the body, however a study conducted research using vaccines  administered using the [[intranasal]]  route had successful results in animals. Using unencapsulated killed  whole-cell pneumococci of the type 6B strain, researchers administered  the vaccine intranasally into rats. The vaccine proved protect the  animal from infection.<ref>[http://iai.asm.org/cgi/content/full/69/8/4870 Malley, R.,  Lipsitch, M., Stack, A., Saladino, R., Fleisher, G., Pelton, S.,  Thompson, C., Briles, D., and Anderson, P. "Intranasal Immunization with  Killed Unencapsulated Whole Cells Prevents Colonization and Invasive  Disease by Capsulated Pneumococci". ''Infection and Immunity''.  August 2001. Vol. 69. p. 4870-4873.]</ref>


Enter summaries of the most recent research here--at least three required
==Current research==
New serotypes are still being discovered. A recent study found a new capsular serotype of ''S. pneumoniae''. Researchers found a new subtype within serotype 6. Two subtypes (A & B) were already known, however a subtype C has now been discovered. This study showed that serotypes can be found within already established serotypes.<ref>[http://jcm.asm.org/cgi/content/abstract/45/4/1225 Park, I., Pritchard, D., Cartee, R., Brandao, A., Brandileone, M., and Nahm, M. "Discovery of a New Capsular Serotype (6C) within Serogroup 6 of Streptococcus pneumoniae". ''Journal of Clinical Microbiology''. April 2007. Vol. 45. p. 1225-1233.]</ref>


==References==
==References==
[Sample reference] [http://ijs.sgmjournals.org/cgi/reprint/50/2/489 Takai, K., Sugai, A., Itoh, T., and Horikoshi, K. "''Palaeococcus ferrophilus'' gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney". ''International Journal of Systematic and Evolutionary Microbiology''. 2000. Volume 50. p. 489-500.]
{{reflist}}
 
 
 
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Streptococcus pneumoniae
Streptococcus pneumoniae.jpg
Scientific classification
Kingdom: Bacteria
Phylum: Firmicutes
Class: Diplococci
Order: Lactobacillales
Family: Streptococcaceae
Genus: Streptococcus
Species: Streptococcus
Binomial name
Streptococcus pneumoniae

[[Image:.]]

Description and significance

Streptococcus pneumoniae, also called pneumococcus, is a Gram-positive, pathogenic bacterium capable of causing numerous infections. It the most common cause of pneumonia and bacterial meningitis, and is commonly found in the upper respiratory tract of humans. S. pneumoniae is shaped like a lancet, a type of knife with a short wide two-edged blade. It is alpha hemolytic (a classification method using the breakdown of red blood cells) and is usually between 0.5 and 1.25 micrometers in size.[1][2]

S. pneumoniae was first isolated in 1881 simultaneously by U.S. Army physician George Sternberg and French chemist Louis Pasteur. S. pneumoniae has been used to prove that genetic material consists of DNA. In 1928 Frederick Griffith co-inoculated live pneumococci into a mouse along with heat-killed, virulent pneumococci. The live, harmless pneumococci were transformed into the lethal form. In 1944 Oswald Avery, Colin MacLeod and Maclyn McCarty found that the transforming factor in Griffith's experiment was DNA. [3]

Genome structure

S. pneumoniae has a 2,160,837 base pair genome sequence. Its chromosome is circular and has 2236 coding regions. Approximately 5% of the genome is composed of insertion sequences that may contribute to genome rearrangements through uptake of foreign DNA. S. pneumoniae has shown a significant increase in antibiotic resistance over the past few decades, due to its rapid growth rate and genetic rearrangements.[4][5]

Cell structure and metabolism

S. pneumoniae is completely surrounded by a capsule made up of polysaccharides. The capsule interferes with phagocytosis by preventing opsonization of its cells. The cell wall of S. pneumoniae is six layers thick and made up of peptidoglycan with teichoic and lipoteichoic acids. Within these acids are choline-binding proteins (CBPs), which adhere to choline receptors on human cells. S. pneumoniae has pili, which are hair-like structures extending from its surface. It also has more than 500 surface proteins, including five penicillin binding proteins (PBPs), two neuraminidases, an IgA protease, as well as choline-binding proteins as stated previously.[6]

S. pneumoniae gains a substantial amount of carbon and nitrogen using extracellular enzyme systems which allow for the metabolism of polysaccharides and hexosamines. These systems also damage host tissues and facilitate colonization.[7]

Ecology

S. pneumoniae is commonly found in the upper respiratory tract of humans, specifically the nasopharynx region. It is found in 5-10% of healthy adults, and 20-40% of healthy children, and is non-pathogenic unless it travels outside this area, with area-specific presentations of infection.

S. pneumoniae sometimes shares its normal habitat with the pathogen Haemophilus influenzae. Individually each pathogen thrives on its own. However, when both pathogens inhabit the region at the same time, after 2 weeks only H. influenzae survives. Immune response caused by H. influenzae leads to the death of S. pneumoniae.

Pathology

Depending on where S. pneumoniae travels, different infections will occur. If it reaches the Eustachian tube or nasal sinuses, otitis media and sinusitis will result. If it enters the lungs, pneumonia will occur. If S. pneumoniae enters the bloodstream, bacteremia will occur and can subsequently result in meningitis, brain abscess, septic arthritis, or osteomyelitis. S. pneumoniae most commonly causes pneumonia and meningitis. Symptoms of pneumonia are cough producing green or yellow sputum, chills, chest pain, fever, and difficulty breathing. Symptoms of meningitis are severe headache, neck stiffness, and fever.[8]

S. pneumoniae has several virulence factors which enable it to evade the human immune system. It has a polysaccharide capsule, which interferes with phagocytosis by preventing opsonization of its cells. It has pneumolysin, a protein that causes lysis of host cells and prevents activation of the complement pathway. It also has autolysin, which lyses its own cells to release its contents. Other virulence factors include hydrogen peroxide, pili, and choline binding protein.[9]

Vaccination

For more information, see: Pneumococcal vaccine.

The reason it is difficult to pinpoint a vaccination is due to the fact that over 90 serotypes of S. pneumoniae exist, and that immunization with a one serotype does not protect against infection with other serotypes. Vaccinations currently in use target multiple serotypes. Young children (under 60 months) are given a heptavalent pneumococcal conjugate vaccine (PCV 7) such as Prevnar.

A recent study showed that a pneumococcal conjugate vaccine introduced in children in the year 2000 showed a significant decrease in effect after 4 years. The 7-Valent pneumococcal conjugate vaccine (PCV7) was introduced in children in 2000, and the proportion of S. pneumoniae isolates susceptible to the antibiotic was tested yearly. After 4 years, the proportion of susceptible isolates decreased significantly, showing that S. pneumoniae builds resistance to antibiotics fairly rapidly.[10]

S. pneumoniae vaccines are typically injected into the body, however a study conducted research using vaccines administered using the intranasal route had successful results in animals. Using unencapsulated killed whole-cell pneumococci of the type 6B strain, researchers administered the vaccine intranasally into rats. The vaccine proved protect the animal from infection.[11]

Current research

New serotypes are still being discovered. A recent study found a new capsular serotype of S. pneumoniae. Researchers found a new subtype within serotype 6. Two subtypes (A & B) were already known, however a subtype C has now been discovered. This study showed that serotypes can be found within already established serotypes.[12]

References